I shoot Nikon and Fuji. LR does a great job on the .NEF's but a poor show on .RAF files. Because of this, I use Capture One for Fuji files.
It's the green part of the fuji files that LR has issues with. Things like grass/foliage have a softness/smearing and for Nikon raw files, Capture One has a 'cheap' look to the sharpening. So yeah.. a pain, but different software for different files.
*Capture one, I just White balance, exposure, sharpen then export a 16bit Tiff to LR and do the rest there. I find Capture One to not be intuitive.